PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG328900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 322aa    MW: 34956.8 Da    PI: 4.6537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG328900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11156198754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Pavir.4NG328900.1.p 156 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 198
                          79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.60E-5142203No hitNo description
PROSITE profilePS5088815.269149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16153221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16156216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9156198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.61E-4249277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MELDEQAFLE EILSLRRDAW DCNATGDFFF PAAACTAAMD CSFQDRHQPP PTVSVLPTFT  60
ASYDQPHPAA PGFDCLSEVY GAAAAFGGPN AGDYGAEMGF LDVIEPKAPL AEGGLGVCKV  120
EPGLAEGAGA FGAGAAPPAP ASKKKRVEGM PSKNLMAERR RRKRLNDRLS MLRSVVPKIS  180
KMDRTSILGD TIDYMKELME RIKLLQEEID EQQQETPGVL SVFRELNPNE MVARNTPKFD  240
VERKESGETR VEIYCASKPG LLLSTVSTLE NLGLDIQQCV VSCFNDFGMH ASCSEMQRER  300
ISADAIKQEL FKNAGYGGGC L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143163KKRVEGMPSKNLMAERRRRKR
2157164ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.87170.0callus| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0429110.0BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds.
GenBankEU9635380.0EU963538.1 Zea mays clone 263876 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966488.10.0PREDICTED: transcription factor bHLH93-like isoform X2
SwissprotQ9LSL11e-68BH093_ARATH; Transcription factor bHLH93
TrEMBLK3XY690.0K3XY69_SETIT; Uncharacterized protein
STRINGSi006877m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-66beta HLH protein 93